inclusion x y z r
inclusion 10 12 0.0 2.0 inclusion 10 12 5.4 5.0
This command defines protein sites on a lattice and can only be used by app_style membrane applications.
Think of the protein as a sphere (or circle) centered at x,y,z and with a radius of r. All lattice sites within the sphere (or circle) will be flagged as protein (as opposed to lipid or solvent). For lattices with a 2d geometry, the z value should be speficied as 0.0.
This command can only be used as part of the app_style membrane applications.